1. Khannapho C, Zhao H, Bonde BK, Kierzek AM, Avignone-Rossa CA, Bushell ME. Selection of objective function in genome scale flux balance analysis for process feed development in antibiotic production. METAB. ENG. 2008 (in press).
2. Beste DJ, Hooper T, Stewart G, Bonde B, Avignone-Rossa C, Bushell ME, Wheeler P, Klamt S, Kierzek AM, McFadden J. GSMN-TB: a web-based genome-scale network model of Mycobacterium tuberculosis metabolism. GENOME BIOLOGY. 2007;8(5):R89.
3. Jacewicz A, Makiela K, Kierzek A, Drake JW, Bebenek A. The roles of Tyr391 and Tyr619 in RB69 DNA polymerase replication fidelity. J MOL BIOL. 2007 368(1).
4. Stec E, Witkowska-Zimny M, Hryniewicz MM, Neumann P, Wilkinson AJ, Brzozowski AM, Verma CS, Zaim J, Wysocki S, D Bujacz G. Structural Basis of the Sulphate Starvation Response in E. coli: Crystal Structure and Mutational Analysis of the Cofactor-binding Domain of the Cbl Transcriptional Regulator.J MOL BIOL 364(3):309-22. 2006
5. Caldwell RB, Kierzek AM. Genome resources for the DT40 community. Subcell Biochem. 2006;40:25-37. Review.
6. Sroka J, Kaczor G, Tyszkiewicz J, Kierzek AM XQTav: an XQuery processor for Taverna environment. BIOINFORMATICS 22(10):1280-1281 2006
7. Zaim J, Speina E, Kierzek AM Identification of new genes regulated by the Crt1 transcription factor, an effector of DNA-damage checkpoint pathway in Saccharomyces cerevisiae J BIOL CHEM 280:28-37 2005
8. Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P, Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci P, Hayashizaki Y, Buerstedde JM. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. GENOME BIOLOGY 6(1):R6. 2005
9. Kierzek AM Simulation of Biochemical Networks. Genetics, Genomics, Proteomics and Bioinformatics. John Wiley & Sons 2005 (review)
10. Hamimes S, Arakawa H, Stasiak AZ, Kierzek AM, Hirano S, Yang YG, Takata M, Stasiak A, Buerstedde JM, Van Dyck E. RDM1, a novel RNA recognition motif (RRM)-containing protein involved in the cell response to cisplatin in vertebrates. J BIOL CHEM 280(10):9225-35 2005.
11. International Chicken Genome Sequencing Consortium (Kierzek AM is included on the list of authors). Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. NATURE 432(7018):695-716. 2004
12. Wahl MB, Caldwell RB, Kierzek AM, Arakawa H, Eyras E, Hubner N, Jung C, Soeldenwagner M, Cervelli M, Wang YD, Liebscher V, Buerstedde JM. Evaluation of the chicken transcriptome by SAGE of B cells and the DT40 cell line. BMC GENOMICS 5(1):98 2004.
13. Puchalka J, Kierzek AM Bridging the gap between stochastic and deterministic regimes in the kinetic simulations of the biochemical reaction networks. BIOPHYSICAL JOURNAL 86:1357-1372 2004
14. Zaim J, Kierzek AM Domain structure of activation induced cytidine deaminase. NATURE IMMUNOLOGY 4(12):1153 2003
15. Zaim J, Kierzek AM The structure of full-length LysR-type transcriptional regulators. Modeling of the full-length OxyR transcription factor dimer. NUCLEIC ACIDS RESEARCH 31(5):1444-1454 2003
16. Speina E, Kierzek AM, Tudek B Chemical rearrangement and repair pathways of 1,N(6)-ethenoadenine. MUTATION RESEARCH 29;531(1-2):205-17. 2003
17. Kierzek AM STOCKS: STOChastic Kinetic Simulations of biochemical systems with Gillespie algorithm. BIOINFORMATICS 18(3): 470-481 2002
18. Kierzek AM, Zaim J, Zielenkiewicz P The effect of transcription and translation initiation frequencies on the stochastic fluctuations in prokaryotic gene expression J BIOL CHEM 276(11): 8165-8172. 2001
19. Kucharczyk R, Kierzek AM, Slonimski PP, et al. The Ccz1p interacts with Ypt7 GTPase in the process of fusion of multiple transport intermediates with the vacuole in S.cerevisiae. J CELL SCI 114(17): 3137-3145. 2001